Package index • ithimr

All functions

AP_dose_response(): Calculate relative risk given PM exposure level
add_distance_columns(): Add strike and casualty distances to injury tables
add_ghost_trips(): Addition of ghost trips
add_motorcycle_trips_Chile(): Personal motorcycle trips for Chilean cities
add_trips(): Additional trips for trip data set
add_walk_trips(): Addition of 'walk to public transport' stages to trip set
ap_dose_response_curve(): Computes RR as a DR relationship - CURRENTLY NOT USED
assign_age_groups(): Assign age groups to individuals
call_evppi(): EVPPI wrapper function for total population YLLs
call_evppi_age_sex(): EVPPI wrapper function for total population YLLs by sex and age
call_evppi_sex(): EVPPI wrapper function for total population YLLs by sex
combine_health_and_pif(): Combine health and potential impact fraction (PIF)
combined_rr_ap_pa(): Combine relative risks from air pollution and physical activity
complete_trip_distance_duration(): Add missing trip information
compute_evppi(): Function to calculate the EVPPI values for given input parameters and outcome values
create_africa_india_scenarios(): Create africa-india scenarios
create_base_pop(): Creates baseline population
create_bogota_scenarios(): Create scenarios for Bogota
create_global_scenarios(): Create global scenarios
create_latam_scenarios(): Create Latam scenarios
dirichlet_pointiness(): Function for Dirichlet parameters
dist_dur_tbls(): Get distances and duration summaries by mode
extract_data_for_voi(): Get ITHIM-results into correct format for VoI analysis
gen_ap_rr(): Get relative risk for diseases given PM exposure
gen_pa_rr(): Get relative risk for diseases given mMETs
get_all_distances(): Find population distances by mode for entire population
get_scenario_settings(): Get values for mode share across distance categories and for max mode share scenario - CURRENTLY only used when calling summary_tables.Rmd
get_synthetic_from_trips(): Generate baseline population from trip data
health_burden(): Compute health burden
ithim_calculation_sequence(): Cascade of computations that form ITHIM-Global
ithim_load_data(): Load data for model and prepare input data for model
ithim_setup_baseline_scenario(): Set up baseline scenario data frame
ithim_setup_parameters(): Set parameters for ITHIM-Global run
ithim_uncertainty(): Sampling routine for running ITHIM with uncertainty
join_hb_and_injury(): Join disease health burden and injury data
run_ithim(): Wrapper for running ITHIM
run_ithim_setup(): Run the set up scripts for ITHIM
scale_trip_distances(): Scale trip distances
scenario_co2_calculations(): Calculate total CO2 exposure per mode and scenario
scenario_pm_calculations(): Calculate total AP exposure per person
set_scenario_specific_variables(): Set scenario specific variables - CURRENTLY NOT CALLED
set_vehicle_inventory(): Collate all vehicle information
total_mmet(): Calculate total mMETs per person
walk_to_pt_and_combine_scen(): Add walk to public transport stages